It better come to 3DS. From what I hear it's in development. Haven't actually researched it yet.
Aonuma said it could possibly happen and that Nintendo is seriously considering it as long as there's enough fan interest. However, he confirmed that his development team is currently working on an original Zelda title for the 3DS. He only said that it that won't be a direct sequel like Phantom Hourglass and Spirit Tracks were. He felt that it would have been bit odd for the 3DS to have two Zelda remakes back to back. He's talked with Miyamoto about a Majora's Mask remake on the 3DS. Although, Miyamoto has expressed interest in possibly doing a remake of A Link to the Past.