UncleSporky
Member
It's not a joke. When you enter the last boss' room, you see (a fake) Dr. Wily turning into the alien. But after you defeat it, you see that it was Dr. Wily controlling everything in that dark room. So, this is the only (original series) Megaman game where the last boss is not Dr. Wily. Contrary to popular belief that the last boss has always been Dr. Wily.
In that case, the last boss is never Dr. Wily, since you're always destroying a machine that he created and is controlling rather than the man himself.