* Misato finds out that EVA project has other purpose
* NERV is being invaded by the JSDF under SEELE's order, initiating massacre, fulfilling the prophecy that the 18th Angel, Humans, are indeed the cruelest Angel of them all.
* Rei III seems to gain self-realization after all of her bitter experiences with Gendou.
* Shinji is in full funk mode resulting him to fap himself to a comatose Asuka
* Misato forces Shinji to pilot EVA again, telling him that it's okay to make mistake as long as he knows why he made those mistakes and try his best not to repeat them again. She conks out.
* Asuka snaps out of her coma, goes berserk against MP EVAs but is eventually overwhelmed and is (assumed) dead.
* Shinji's mind snaps out when he saw Asuka's fate and initiated 3rd impact.
* Instrumentality begins, Rei III rejects Gendou, and merge with Lilith on her own accord. She then liquidifies every humans so they can all become one whole Lilith again.
* Shinji is eventually assimilated too. Much to his dismay, however, instrumentality can't solve his self-esteem issue. Instead, he ends up having to confront his own fucked up/low self-esteem, imagining that everyone actually hates him.
* Kaworu + Rei due to their time with Shinji agrees that despite his flaws, Shinji is the best person to determine the fate of humanity.
* Kaworu + Rei offers Shinji a chance to keep things as is or to revert everyone as humans. Despite the hurt he got from other humans, Shinji felt that he'd rather see them again than existing as one entity together.
* As a result of his wish, Lilith splits and instrumentality is canceled. Everyone who wants to return to their previous individual form can do so.
* The ending reveals that the purpose of EVA-01 was to act as new Noah's Ark in case the sun, the moon, and the earth cease to exist. EVA-01 can live forever even after those stars perish.
* At the end, it seems only Shinji and Asuka want to return to their individuality. Shinji, still thinking that Asuka actually hates him, started to choke him. She, however, stroke his face, implying that most of his issues are on his mind. She doesn't really hate him. Well, not really. She prob still thinks he's a bit pathetic thus her "I feel sick".