out of OP's list, I enjoyed the following a lot. what a fantastic year.
2064: Read Only Memories (PS4)
ARMS (NS)
A Rose in the Twilight (Vita)
Atelier Shallie Plus: Alchemists of the Dusk Sea (Vita)
Cave Story (NS)
Cities Skylines (PS4, XBO)
Danganronpa 1-2 Reload (PS4)
Dark Souls III: The Ringed City (and The Fire Fades Edition) (PS4, XBO, PC)
Dragon Quest Heroes II (PS4, PC)
Dragon Quest VIII: Journey of the Cursed King (3DS)
Everybody's Golf (PS4)
Ever Oasis (3DS)
Final Fantast XII: The Zodiac Age (PS4)
Fire Emblem Echoes: Shadows of Valentia (3DS)
Forza Horizon 3 Hotwheels Expansion (XBO, PC)
Full Throttle Remastered (PS4, PC, Vita)
Golf Story (NS)
Guilty Gear Xrd Rev 2 (PS4)
Gravity Rush 2 (PS4)
Halo Wars: Definitive Edition (XBO)
Halo Wars 2 (XBO, PC)
Hatsune Miku: Project DIVA Future Tone (PS4)
Horizon Zero Dawn (PS4)
I Am Setsuna (NS)
Injustice 2 (PS4, XBO)
Kingdom Hearts HD 1.5 + 2.5 ReMIX (PS4)
Kingdom Hearts HD 2.8 Final Chapter Prologue (PS4)
LEGO Worlds (PS4, XBO, PC)
Life Is Strange: Before The Storm (PS4, XBO, PC)
LocoRoco Remastered (PS4)
Mario Kart 8 Deluxe (NS)
Mario + Rabbids: Kingdom Battle (NS)
Metroid: Samus Returns (3DS)
Minecraft: Switch Edition (NS)
NBA 2K18 (PS4, XBO, NS, PS3, 360, PC)
Nex Machina: Death Machine (PS4, PC)
NieR: Automata (PS4, PC)
Nioh (PS4)
Persona 5 (PS4, PS3)
Pillars of Eternity: Complete Edition (PS4, XBO)
Puyo Puyo Tetris (PS4, NS)
Pyre (PS4, PC)
Rabi-Ribi (PS4)
Shovel Knight: Treasure Trove (NS)
Sonic Mania (PS4, XBO, NS, PC)
Steamworld Dig 2 (PS4, NS, PC, Vita)
Story of Seasons: Trio of Towns (3DS)
Tales of Berseria (PS4, PC)
The Binding of Isaac: Afterbirth+ (NS)
The Legend of Zelda: Breath of the Wild (NS, WiiU)
The Legend of Zelda: Breath of the Wild: The Master Trials (NS)
Thumper (NS)
Torment: Tides of Numenera (PS4, XBO, PC)
Total War: WARHAMMER II (PC)
Touhou Genso Wanderer (PS4, Vita)
Toukiden 2 (PS4, PC, Vita)
Tumbleseed (PS4, NS, PC)
Undertale (PS4, Vita)
Wonder Boy: The Dragon's Trap (PS4, XBO, NS)
Yakuza 0 (PS4)
Yakuza Kiwami (PS4)
Ys Origin (PS4)
Ys VIII: Lacrimoso of Dana (PS4, PC, Vita)
Zero Escape: The Nonary Games (PS4, PC, Vita)