I'm ok with this.
I'm more interested in how the story develops, not in the general theme of the game.
The general theme of a story is probably one of the most important parts of creating a story, duh. The reason people hate Mass Effect 3's ending is because the theme was broken when it suddently became "Organics vs Synthetics" at the final 10 minutes with almost no buildup, until they added Extended Cut and Leviathan (too little, too late, and stil detracted from what was really ME3's central theme IMO!)