The bottom right portion of the unit in this image
looks substantially different than in the above one. Although this other image from the OP:
looks the same. It seems like a component was removed from that area in the first image, any ideas what it was?
As Graphics Horse says, there's a daughter board for the game card slot (and headphone jack) which was removed in the first photo (presumably to get photos of it, as they posted a separate photo of the daughter board on its own).
Here's something interesting I noticed on the new photo, though. There's a small low-profile connector on the motherboard which isn't connected to anything:
This is also unconnected in all the other photos we've seen, and none of the components we've seen would interface with it. It's also in a position where there really wouldn't be much space for anything to sit if it were connected.
One theory that did occur to me is that it's an alternative for the eMMC connector. That is, it's designed for a small board which sits above the wifi/bluetooth module, just as the eMMC board does, but which needs a different interface. This could be embedded UFS (or even in theory BGA NVMe), and it would help explain why the eMMC module is on its own board in the first place.
Edit:
So here's something interesting: the left and right joy-cons have different antenna configurations:
Following recent reports of the left joy-con not having quite as good wireless connectivity as the right one, it's interesting to see that they do have physically different antenna configurations. On the image of the right joy-con we can see the antenna connection on the PCB, and a wire running to a metal plate, which it's soldered to. This metal plate is likely acting as the antenna (and may wrap around out of view of this photo).
On the left joy-con, though, we don't see the antenna connector, the wire or the metal plate. The joy-con definitely has an antenna (it physically has to to transmit wireless signals), but it's not visible in this photo, and it's different to the antenna Nintendo is using in the right joy-con. That's not necessarily to say that it's
worse, but it's not the same.
It's interesting to consider why Nintendo didn't just use the same antenna configuration between both units. It's possible that the extra data transferred by the right joy-con while using the infra-red camera on the bottom required a higher quality connection with Switch, so they upgraded it to a beefier antenna while leaving the left joy-con one as-is.