Why would you do that? said:
Ocarina of Time: Gerudo Fortress. I don't like stealth missions, too nerve-wracking.
That was my favorite part on my last playthrough.Hitting the Gerudos from far by running sidewards without Z-Targeting,so awesome.And not really violent at all,thankfully-you just somehow knock them out with the arrows (ha, realism).Oh,and I liked the stealth section in Wind Waker,especially because you can skip the most guards anyway.
But back to topic:
Twilight Princess has the intro and the light bug hunt for three times.If they would've cut them,TP would've been second place in my list.
FFXII:Giruvegan and the great crystal right after that.Also the Pharos on the second ascent-the other two were alright,but the second ascent was really boring.
Mystical Ninja Starring Goemon:The first dungeon.The other dungeons are way better.Luckily,there's the fight on the Dragon shortly after that.
Paper Mario TTYD:Fourth chapter,I think,the one with the villagers who turn into pigs.Running to the castle,to the town,to the castle,to the town...