If by "the rest" you mean swiping your finger all over the screen to "dust off" artifacts (gets old fast), watching cut scenes, and walking/jumping around, sure. This is like saying "Gears Of War has shitty controls, but everything else is great!"
All they have to do is patch the game. This is something that should be able to be fixed pretty easily.
It looks fantastic for a new portable launch title. And I don't care. I don't play games for their graphics.
i play games for a number of things, and vita's appeal, one of them is graphics, so i am happy that this game delivers, that is great news for me.
as for controls, only issue seems aiming, and not for everyone, so i'll be on the positive side untill i have the game (and hoping that there's a demo at launch, i'll be able to test before buy too )